The Revio system by PacBio is revolutionizing long-read sequencing with its game-changing technology. The Global Institute for Food Security becomes the first lab in Western Canada to add a Revio to their core lab, allowing them to scale their use of PacBio HiFi sequencing technology. PacBio celebrates 1 year of Revio, highlighting its exceptional high throughput and outstanding accuracy. Pamela Nicholson, a proud Revio owner, praises its impact on service providers and researchers. SimReadUntil is a tool for benchmarking selective sequencing algorithms on ONT devices. A new device is developed that rapidly releases and amplifies genetic material from a nasal swab sample, producing results viewable on a smartphone app.
"The device works by rapidly releasing and amplifying genetic material from a nasal swab sample by carrying out a chemical reaction to produce a result, which can be viewed on a smartphone app." Amazing https://t.co/RrTPv0fiA7
SimReadUntil enables benchmarking and hyperparameter tuning of selective sequencing algorithms. The hyperparameters can be tuned to different ONT devices, e.g., a GridION with a GPU can compute more than a portable MinION/Flongle that relies on a computer.
SimReadUntil takes as input a set of full reads. The reads may include adapter and barcode sequences. The (shuffled) full reads are distributed to the channels and short and long gaps are inserted between reads, where a long gap signifies a temporarily inactive channel.
SimReadUntil simulates an ONT device w/ support for the ReadUntil, accessible both directly and via gRPC from a wide range of programming languages. It only needs FASTA files of reads, and allows to focus on the SSDA and removes the need for a GPU required by modern basecallers.
SimReadUntil for Benchmarking Selective Sequencing Algorithms on ONT Devices https://t.co/DS5X3L4AxQ https://t.co/IV3ngixlxL
SimReadUntil for Benchmarking Selective Sequencing Algorithms on ONT Devices https://t.co/HTHvInQ9sq #biorxiv_bioinfo
Proud new Revio owner Pamela Nicholson, PhD, praises the game-changing impact of the #Revio system on service providers & researchers, offering high-quality sequencing at 15x more throughput compared to Sequel IIe system. https://t.co/DUhvajcr7T #PacBio #ASHG23 #ASHG2023 https://t.co/ktyCVwdio2
New toy arrived! High-throughout, accurate, long-read sequencing on a palm-sized device! https://t.co/dpf7RGZhDu
🎉 Celebrating 1 Year of Revio! 🧬 We are blown away by the exceptional high throughput and outstanding accuracy of the #Revio data achieved by our #PacBio customers. Here's to many more years of game-changing discoveries! #ASHG23 #ASHG2023 #RevioAnniversary https://t.co/dSxCuCdJ32
The Revio system was built with the belief that game-changing technology should be simple to use, with performance you can count on. This guide highlights the key #Revio features that are revolutionizing long-read sequencing. https://t.co/oZuZSdF6GE #PacBio #ASHG23 #ASHG2023
🎉 Congrats to The Global Institute for Food Security for being the 1st lab in Western Canada to add a #Revio to their world-class core lab, allowing them to dramatically scale their use of #PacBio HiFi sequencing technology. https://t.co/djX76nUL6o #ASHG23 #ASHG2023